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Cleaning and Disinfecting Your Poultry House

As spring approaches, the time is almost here to do a good cleaning and disinfecting of your poultry facilities after the long winter. This is especially true if you are considering bringing in new birds or replacing your flock, be they layers, meat birds or show birds. Decontaminating your poultry house is crucial in order to prevent Marek’s disease, mycoplasma, respiratory viruses, E.coli, mites, and other poultry health problems. Even more important is the control of Salmonella Enteritidis (SE), especially in laying hens. SE can colonize in a chicken’s intestinal tract without necessarily causing obvious disease in the chicken itself. This may lead to the organism invading other tissues and eventually finding its way into the reproductive tract and ovary, contaminating the egg itself.

Young chickens in a wood and wire coop. Photos by New Entry Sustainable Farming Project
Young chickens in a wood and wire coop. Photos by New Entry Sustainable Farming Project

In order to reduce SE and other health risks, a complete dry cleaning, washing and disinfection of the poultry house after each flock or at minimum once each year is recommended. Successful cleaning is hard work and requires systematic completion of several sequential steps. Every step is important. Skipping one step or doing an incomplete job at any point will make the next step harder and lead to failure.
Start by removing all birds from the building to be cleaned, along with all equipment that can be cleaned in another place, such as feeders and waterers.

Dry Cleaning
Sweep or blow dust and other loose dirt off ceilings, light fixtures, walls, cages or nest boxes, fans, air inlets etc. onto the floor. Remove all feed from feeders. Scrape manure and accumulated dust and dirt from perches and roosts. Remove all litter from the floor.  Litter can be added to a compost pile. Sweep the floor to remove as much dry material as possible. With a small coop, a wet-dry shop vacuum does a good job of removing this material. However, be careful to clean the filter often as the fine dust from the coop may easily clog the filter and make the vacuum work harder or lead to burn out of the motor.

Wet Cleaning
Turn the power off to the building prior to using any water for cleaning. Wet cleaning is done in three steps: soaking, washing and rinsing. Warm or hot water will do a better job getting through organic matter than cold water. You can use a cheap neutral detergent, like dish soap.

Soaking
Soak the heavily soiled areas (perches and roosting areas, floors, etc.) thoroughly. Use a low pressure sprayer to totally soak all surfaces. Soak until the accumulated dirt and manure has softened to the point it is easily removed.

Washing
Wash every surface in the building, especially window sills, ceiling trusses, wall sills and any surface where dirt and dust may accumulate. The washing solution can be either a neutral detergent (ph between 6 and 8) or an alkaline detergent (ph above 8). Alkaline substances vary in their strength with the strongest causing burns and internal injuries if swallowed. A mild alkali is baking soda (sodium bicarbonate) and moderate alkalis include household ammonia, borax and trisodium phosphate. Strong alkalis include washing soda (sodium carbonate) and lye (caustic soda). Mix in hot water—160oF or hotter is best.

A high pressure sprayer is good for this step, but manual scrubbing with a moderately stiff brush is one of the best ways to insure a thorough cleaning. Inspect manually to be sure you have removed all of the dirt and manure from all surfaces. Make sure you carefully clean electrical parts.  You may have to remove cover plates and vacuum those areas.

If you have metal surfaces with hard water scale, then you will need to use an acid detergent on those surfaces to remove the scale. Acid detergent involves acid as the major component which is used in dissolving mineral deposits (Calcium and Magnesium precipitates) or hard water deposits from equipment surfaces. Two main groups of acid detergents are: inorganic (HCL, H2SO4), and organic (Vinegar, Citric Acid).

Rinsing
A final rinse immediately after washing is recommended to remove any harmful residues and to obtain a spotless building. Mop up puddles as they can rapidly become breeding grounds for salmonellae.

Drying
Thoroughly air-dry the building if disinfection cannot immediately follow rinsing. Open all windows and ventilation openings. Use a blower or fan if available. Cleaning on a dry, sunny day helps in the drying process.

Repairs
Make any repairs to the structure prior to the final disinfection step. Seal any rodent entry holes at the outside and inside of the building. Apply a small amount of spray foam insulation into the hole, then pack in fine steel wool and top with more spray foam.

Disinfecting

This is a crucial step which the small flock owner might normally overlook. Disinfectants should be applied only after the building and equipment have been thoroughly cleaned, ideally right after rinsing. Disinfectants can be applied by sprays, aerosols or fumigation. Don’t be intimidated by the thought of “fumigating” your hen house: for most small flock facilities, using a garden type sprayer is the easiest method, and chances are you already have a suitable disinfectant around the house. The types of disinfectants generally used are phenolic compounds (e.g., Pine-sol, One Stroke, Osyl),  iodine or iodophors, (e.g., Betadine and Weladol), chlorine compounds (e.g., Clorox, generic bleach), quaternary ammonium compound (e.g., Roccal D Plus) and oxidizing compounds (e.g., Virkon S, Oxy-Sept 333).

Follow the manufacturer’s directions for mixing and dilution of these disinfectants.  A good rule of thumb is to apply at the rate of one gallon of diluted disinfectant per 150-200 square feet of surface area. For a more thorough disinfecting, soak waterers and feeders in a 200 ppm chlorine solution (1 tablespoon chlorine bleach per gallon of boiling water).

Comments

47 responses to “Cleaning and Disinfecting Your Poultry House”

  1. This is an excellent article, and I admit to missing on some of these steps. Thanks for the step by step process; it’s something I plan to tackle this weekend as selling eggs is a big part of my small farm business.

  2. Gbeinbo Hope Avatar
    Gbeinbo Hope

    please, i did an assistance concerning my project work (assessment of post cleaning salmonella contamination in poultry. please help me if you can with some relevant materials. thanks

    1. Kambiz Pirzahed Avatar
      Kambiz Pirzahed

      Hi , Do you suggest rinsing the saloon surfaces and walls with water after spraying disinfectants , before fummigation ?

  3. Anthony Phillips Avatar
    Anthony Phillips

    I work for a Egg Company and we have a 2002 0r 2003 Diamond 8400 Series Egg Grading Machinery and we are have problems cleaning the stainless steel parts which there can be no water applied to the machine because of the electronics. Need tips on how to get the egg shells and dried egg off of the steel stars and the perch that runs in a machine that detect cracked , dirt and blood detectors if you know what i am talking about. Call me at 912-310-0906. Thanks AJP.

    1. AJP,

      ACID is the best solution and method to clean the sections such as star wheels and areas of egg protein or egg shell. An alcohol based sanitizing wipe or product is another approved method for no water zones in egg processing.

    2. Remove the JDM plastic borders ,(they’re the black ones on the edges). Pick up the stainless star screen and scrub with a brush and boraxo cleaner. Apply a thin layer of crisco lard and let sit for a day, then come back with boiling water and rinse off.

  4. Jennifer E Avatar
    Jennifer E

    We live and work on an 8 house chicken farm with an average of 250,000 chickens every 7-8 weeks. The owners and the company decided they wanted to bleach the houses because the ammonia levels were too high. The fumes from this are leaking into our house and causing myself and my newborn respiratory problems. What alternative to bleach can I suggest to them that will neutralize the ammonia without giving off toxic fumes?

    1. Ars Bhatti Avatar
      Ars Bhatti

      what kind a feed you guys use for that many chickens ?
      Thnx

    2. John Hines Avatar
      John Hines

      It’s a late reply but mild fish soap and a pressure washer.
      Hot water.

    3. Sachin Avatar

      Use Dr.Zyme (NCH life sc.)

    4. Steven L Overstreet Avatar
      Steven L Overstreet

      Try Stalosan in powder farm, can be blown in with chickens in the house.

  5. Sarah Diana Nechamen Avatar
    Sarah Diana Nechamen

    Hi Jennifer,
    Good question! I’ve sent an email to the author asking him to respond and copied you on the message.

  6. Tonya R Avatar

    Jennifer E, White Vinegar is a great alternative to bleach

  7. Margaret Brandt Avatar
    Margaret Brandt

    Greetings;
    If there has been SE in coop and all birds culled,how long before new birds can come in after thorough cleaning and disinfection? Should we just build another coop?

  8. Sarah Diana Nechamen Avatar
    Sarah Diana Nechamen

    Hi Margaret,
    I’ve sent your question over to the author of the article and copied you on the email.

  9. Great step by step for cleaning my hen house. But I have just noticed mites on my girls. I am going to dust them all with poultry dust after I thoroughly clean the coop. But Will this process kill the lice and mites that are in the coop? I think I’ll be using bleach for the disinfecting part.

  10. Carli Fraccarolli Avatar
    Carli Fraccarolli

    Hi Kari,
    I would suggest that you contact the author of this article, Dr. Michael J. Darre. He should be able to answer your questions about poultry lice/mites. His contact information can be found at the end of the text.

  11. What about how to clean the chicken run after having salmonella enteritidis?

  12. Anne Marie Avatar

    We have 2 chickens in a coop with a sand floor. A small amount of hay is in their above-ground nest box. We keep almost no hay on the property because we are a program that houses 20 disabled raptors (hawks, falcons, etc.). Hay greatly increases the risk of aspergilloses. We scoop daily and keep the rest of the coop very clean but what is the best way to disinfect the sand? Would wood shavings be a safer alternative than hay?

    1. zsuzsanna pragai Avatar
      zsuzsanna pragai

      I always use wood shaving in the egg laying boxes and pine based bedding (aubiose or easichick) on the floor. Hay isn’t recommended for the fungal infection possibility.

  13. Tara Hammonds Avatar
    Tara Hammonds

    Hi Zequek,
    To make sure that Michael sees your question, you can send it to him directly at michael.darre@uconn.edu or (860) 486-1008. Hope this helps!

  14. Terri Avatar

    I have the same question about how to disinfect a sand floor. In FL. it’s about the only option we have. The chickens do a lot of digging, and quite deep as they’re trying to reach cool spots in the summer. What is the best thing to use on sand where it can’t be dried.

  15. Terri Avatar

    Thank you very much. I hope to hear from him soon. Out of nowhere my flock of 38, with broody hens getting ready to hatch chicks within a weekish, have come down with some sort of respiratory issues. I have put them on antibiotics, vetRX, and the vitamins and probiotics, and they’re getting better but I’m worried about any residual effects and the chicks, especially when it’s impossible to dry sandy soil.
    Thanks again!

  16. Marnas farm Avatar
    Marnas farm

    How do i disinfect a three step poultry pen built with wood

  17. Chienge Nyaroka Avatar
    Chienge Nyaroka

    I would like help with disinfecting my chicken house and grounds following complete removal of a stock that had coryza infection

    1. Kelsie Raucher Avatar
      Kelsie Raucher

      Hi Chienge,

      The author of this article, Dr. Michael J. Darre, might know more about coryza infection. He can be reached at michael.darre@uconn.edu or (860) 486-1008.

  18. Chienge Nyaroka Avatar
    Chienge Nyaroka

    please advise on disinfection following removal of chickens infected with coryza

    1. Kelsie Raucher Avatar
      Kelsie Raucher

      Hi Chienge,

      I’d recommend reaching out directly to the author of the article with your question. Michael can be reached at michael.darre@uconn.edu or (860) 486-1008.

  19. Donna Balmer Avatar
    Donna Balmer

    How much does it cost to get professional company to wash down average size poultry house?

  20. Paul odwory Avatar
    Paul odwory

    Thanks. I would also want to invest in this business. I need some advise on poultry farming.
    Paul

  21. Clement Arthur Avatar
    Clement Arthur

    We are interested in the suggestions pest them here for our perusal

  22. how much volume of water needed to clean per square meter of the poultry house?

  23. Muhammad zubair Avatar
    Muhammad zubair

    Greetings;
    If there has been SE in coop and all birds culled,how long before new birds can come in after thorough cleaning and disinfection? Should we just build another coop?

  24. hello, thank you for a good article.

    I have an important question. So the situation is, in our chicken houses, we used caustic soda in powder form directly onto the wet ground. we do not dissolve it in water. the next day we disinfect the ground with a chemical called Vet4Des. in the ingredients, it says it includes peroxide, surfactants, organic acids and an inorganic buffer system. My question is, since the disinfecting chemical includes organic acid, shouldn’t we first rinse out the caustic soda from the ground as this two chemical can react and inactivate the active ingredient in the disinfecting product?

    also what do you think about using caustic soda directly as powder form straight to the ground? is that a normal practice?

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